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Home > Problems > Chapter 10
PROBLEM 7
- Retrieve a protein sequence of your choice that was listed in the SCOP structural hierarchy and obtain the sequence from the sequence link.
- Paste the sequence into the sequence entry window on the 3DPSSM server. This server searches a sequence (no more than 800 amino acids at a time) using a set of position-specific scoring matrices that are based on alignments of proteins that have the same structural fold and a similar sequence. A match to one of these matrices thus identifies a potential three-dimensional structure. The results are sent back by E-mail or to a designated Web site.
- How does the prediction compare roughly to the SCOP structure?
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