Bioinformatics Online Home
   Chapters Links Problems Enroll for Updates Help
 Sample image
 Web search terms

Home  >  Chapters  >  1  > 

Chapter 1 Web Search Terms

These terms may be used to track current Internet addresses of sites referenced in this chapter using search engines.

ACEDB Database management system for genetic information of an organism.
BLAST and FASTA Tools for fast searches of databases for similar sequences.
CLUSTALW and T-COFFEE Examples of multiple sequence alignment programs.
DDJP DNA DataBank of Japan.
EBI European Bioinformatics Institute.
EMBL European Molecular Biology Organization and sequence databases.
ENSEMBL The genome server at the European Bioinformatics Institute.
ENTREZ Search engine for GenBank and PubMed.
JIPID Japan International Protein Information Database.
MIPS Munich Center for Protein Sequences.
NCBI National Center for Biotechnology Information, home of GenBank.
PHRED, PHRAP, and CONSED Tools for base calling and sequence editing in DNA sequence data.
PIR Protein Identification Resource/International Protein Sequence Database.
PROSITE Databases of conserved patterns in proteins related to activity.
PSI-BLAST BLAST tool that searches sequence databases for conserved domains.
RDP Ribosomal RNA database.
TIGR The Institute of Genomics Research.
UNIGENE Database of predicted set of genes for an organism based on alignment of partial DNA copies of mRNA sequences (expressed sequence tag or EST sequences).


© 2004 by Cold Spring Harbor Laboratory Press. All rights reserved.
No part of these pages, either text or image, may be used for any purpose other than personal use. Therefore, reproduction, modification, storage in a retrieval system, or retransmission, in any form or by any means, electronic, mechanical, or otherwise, for reasons other than personal use, is strictly prohibited without prior written permission.


Home Chapters Links Problems Enroll for Updates Help CSHL Press